EXPLOITING RECEPTOR NANOCLUSTERS TO BIAS CLATHRIN VS. CAVEOLIN UPTAKE: MOLECULAR DESIGN RULES FOR TARGETED ANTI-CANCER NANOMEDICINES

Main Article Content

Anamika Dutta
Trilochan Satapathy
Poonam Sahu

Abstract

Targeted nanomedicine has advanced beyond cell-specific binding toward the deliberate programming of cellular entry pathways. A central determinant of endocytic pathway selection is receptor nano-clustering, a dynamic process governed by multivalent ligand interactions, membrane lipid organization, and cytoskeletal constraints. This work outlines molecular design principles for engineering nanoparticles that bias uptake toward clathrin-mediated or caveolin-mediated endocytosis. Evidence across model systems suggests that nanoparticles in the 30-80 nm size range with moderate-to-high ligand densities (~10-100 ligands per particle or ~0.01-0.1 ligands nm⁻²) typically promote receptor aggregation sufficient for clathrin-mediated endocytosis (CME) through adaptor protein recruitment and progressive membrane curvature. Particles of approximately 50-150 nm, particularly those presenting lower-to-intermediate ligand densities (~0.001-0.05 ligands nm⁻²) and broader spatial ligand separation, more frequently engage caveolin-mediated endocytosis (CvME) within cholesterol-rich membrane domains, facilitating intracellular delivery while reducing lysosomal exposure. Beyond size and ligand density, nanoparticle shape, ligand spacing (~10-30 nm inter-ligand distance), and receptor-ligand residence time collectively regulate clustering geometry and pathway stability. Clathrin-mediated uptake supports efficient internalization but often directs cargo toward degradative endo-lysosomal compartments; caveolin-associated entry may preserve the integrity of sensitive therapeutic payloads. Integration of quantitative imaging, computational modeling, and microenvironmental factors enables predictive control over intracellular trafficking. These insights establish receptor nano-clustering as a tunable design variable for optimizing therapeutic delivery and achieving pathway-selective enhancement of anti-cancer nanomedicines.

Article Details

How to Cite
Dutta, A. ., Satapathy, T. ., & Sahu, P. (2026). EXPLOITING RECEPTOR NANOCLUSTERS TO BIAS CLATHRIN VS. CAVEOLIN UPTAKE: MOLECULAR DESIGN RULES FOR TARGETED ANTI-CANCER NANOMEDICINES. Journal of Applied Pharmacology and Toxicology, 2(1), 17–49. https://doi.org/10.69857/joapt.v2i1.40
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References

Li Y, Sun H, Cao D, Guo Y, Wu D, Yang M, Wang H, Shao X, Li Y, Liang Y. Overcoming biological barriers in cancer therapy: cell membrane-based nanocarrier strategies for precision delivery. International Journal of Nanomedicine, 20, 3113–3145 (2025) https://doi.org/10.2147/IJN.S497510.

Gawali P, Saraswat A, Bhide S, Gupta S, Patel K. Human solid tumors and clinical relevance of the enhanced permeation and retention effect: a ‘golden gate’ for nanomedicine in preclinical studies? Nanomedicine, 18(2), 169–190 (2023) https://doi.org/10.2217/NNM-2022-0257.

Huang D, Sun L, Huang L, Chen Y. Nanodrug delivery systems modulate tumor vessels to increase the enhanced permeability and retention effect. Journal of Personalized Medicine, 11(2), 124 (2021) https://doi.org/10.3390/jpm11020124.

Subhan MA, Yalamarty SSK, Filipczak N, Parveen F, Torchilin VP. Recent advances in tumor targeting via EPR effect for cancer treatment. Journal of Personalized Medicine, 11(6), 571 (2021) https://doi.org/10.3390/jpm11060571.

Dhaliwal A, Zheng G. Improving accessibility of EPR-insensitive tumor phenotypes using EPR-adaptive strategies: designing a new perspective in nanomedicine delivery. Theranostics, 9(26), 8091–8108 (2019) https://doi.org/10.7150/thno.38069.

Moschou SP, Drake JJ, Cohen O, Alvarado-Gómez JD, Garraffo C, Fraschetti F. The stellar CME-flare relation: what do historic observations reveal? The Astrophysical Journal, 877(2), 105 (2019) https://doi.org/10.3847/1538-4357/ab1b36.

Onzi G, Guterres SS, Pohlmann AR, Frank LA. Passive targeting and the enhanced permeability and retention (EPR) effect. In: The ADME Encyclopedia: A Comprehensive Guide on Biopharmacy and Pharmacokinetics. Cham: Springer International Publishing, 753–766 (2022) https://doi.org/10.1007/978-3-030-51519-5_66.

Blal N, Bardi G, Pompa PP, Guarnieri D. Nano-biointeractions of functional nanomaterials: the emerging role of inter-organelle contact sites, targeting and signaling. Advanced Functional Materials, 34(52), 2408436 (2024) https://doi.org/10.1002/adfm.202408436.

Talevi A, Bellera CL. Personalized medicine and drug metabolism. In: The ADME Encyclopedia: A Comprehensive Guide on Biopharmacy and Pharmacokinetics. Cham: Springer International Publishing, 781–786 (2022) https://doi.org/10.1007/978-3-030-51519-5_68.

Makhani EY, Zhang A, Haun JB. Quantifying and controlling bond multivalency for advanced nanoparticle targeting to cells. Nano Convergence, 8(1), 38 (2021) https://doi.org/10.1186/s40580-021-00286-3.

Dhiman S, Vleugels ME, Post RA, Crippa M, Cardellini A, Korver ED, Su L, Palmans AR, Pavan GM, Van Der Hofstad RW, Albertazzi L. Reciprocity in dynamics of supramolecular biosystems for the clustering of ligands and receptors. Proceedings of the National Academy of Sciences of the United States of America, 122(37), e2500686122 (2025) https://doi.org/10.1073/pnas.2500686122.

Choi Y, Cho BK, Seok SH, Kim C, Ryu JH, Kwon IC. Controlled spatial characteristics of ligands on nanoparticles: determinant of cellular functions. Journal of Controlled Release, 360, 672–686 (2023) https://doi.org/10.1016/j.jconrel.2023.06.039

Gao XJ, Ciura K, Ma Y, Mikolajczyk A, Jagiello K, Wan Y, Gao Y, Zheng J, Zhong S, Puzyn T, Gao X. Toward the integration of machine learning and molecular modeling for designing drug delivery nanocarriers. Advanced Materials, 36(45), 2407793 (2024) https://doi.org/10.1002/adma.202407793.

Navaneeth AG, Karthikeyan S. A comprehensive investigation of the biophysical approach for aptamer functionalized nanoparticles in cancer therapy: a review. RSC Pharmaceutics, 1(5), 879–903 (2024) https://doi.org/10.1039/D4PM00070K.

Dasram MH, Walker RB, Khamanga SM. Recent advances in endocannabinoid system targeting for improved specificity: strategic approaches to targeted drug delivery. International Journal of Molecular Sciences, 23(21), 13223 (2022) https://doi.org/10.3390/ijms232113223.

Wang HY, Bharti D, Levental I. Membrane heterogeneity beyond the plasma membrane. Frontiers in Cell and Developmental Biology, 8, 580814 (2020) https://doi.org/10.3389/fcell.2020.580814.

van Deventer S, Arp AB, van Spriel AB. Dynamic plasma membrane organization: a complex symphony. Trends in Cell Biology, 31(2), 119–129 (2021) https://doi.org/10.1016/j.tcb.2020.10.002.

Tripathy M, Srivastava A. Lipid packing in biological membranes governs protein localization and membrane permeability. Biophysical Journal, 122(13), 2727–2743 (2023) https://doi.org/10.1016/j.bpj.2023.05.028.

Lee TH, Charchar P, Separovic F, Reid GE, Yarovsky I, Aguilar MI. The intricate link between membrane lipid structure and composition and membrane structural properties in bacterial membranes. Chemical Science, 15(10), 3408–3427 (2024) https://doi.org/10.1039/D3SC05712A.

Mandhare A, Banerjee P, Bhutkar S, Hirwani R. Click chemistry for diagnosis: a patent review on exploitation of its emerging trends. Expert Opinion on Therapeutic Patents, 24(12), 1287–1310 (2014) https://doi.org/10.1517/13543776.2014.972935.

Raj EN, Lin YW, Chen CH, Liu KK, Chao JI. Selective autophagy pathway of nanoparticles and nanodrugs: drug delivery and pathophysiological effects. Advanced Therapeutics, 3(9), 2000085 (2020) https://doi.org/10.1002/adtp.202000085.

Zhang S, Li Q, He K, Cui Z, Sheng X, Zhu Y, Tan T. Computational redesign of an enoate reductase for the in vivo production of adipic acid from muconic acid. Chem Catalysis, 4(8), 100976 (2024) https://doi.org/10.1016/j.checat.2024.100976.

Rennick JJ, Johnston AP, Parton RG. Key principles and methods for studying the endocytosis of biological and nanoparticle therapeutics. Nature Nanotechnology, 16(3), 266–276 (2021) https://doi.org/10.1038/s41565-021-00858-8.

de Almeida MS, Susnik E, Drasler B, Taladriz-Blanco P, Petri-Fink A, Rothen-Rutishauser B. Understanding nanoparticle endocytosis to improve targeting strategies in nanomedicine. Chemical Society Reviews, 50(9), 5397–5434 (2021) https://doi.org/10.1039/D0CS01127D.

Saminathan A, Zajac M, Anees P, Krishnan Y. Organelle-level precision with next-generation targeting technologies. Nature Reviews Materials, 7(5), 355–371 (2022) https://doi.org/10.1038/s41578-022-00417-5.

Renard HF, Boucrot E. Unconventional endocytic mechanisms. Current Opinion in Cell Biology, 71, 120–129 (2021) https://doi.org/10.1016/j.ceb.2021.03.010.

Mandhare A, Banerjee P, Bhutkar S, Hirwani R. Click chemistry for diagnosis: a patent review on exploitation of its emerging trends. Expert Opinion on Therapeutic Patents, 24(12), 1287–1310 (2014) https://doi.org/10.1517/13543776.2014.973856.

Raj EN, Lin YW, Chen CH, Liu KK, Chao JI. Selective autophagy pathway of nanoparticles and nanodrugs: drug delivery and pathophysiological effects. Advanced Therapeutics, 3(9), 2000085 (2020) https://doi.org/10.1002/adtp.202000085.

Zhang S, Li Q, He K, Cui Z, Sheng X, Zhu Y, Tan T. Computational redesign of an enoate reductase for the in vivo production of adipic acid from muconic acid. Chem Catalysis, 4(8), 100976 (2024) https://doi.org/10.1016/j.checat.2024.06.012.

Rennick JJ, Johnston AP, Parton RG. Key principles and methods for studying the endocytosis of biological and nanoparticle therapeutics. Nature Nanotechnology, 16(3), 266–276 (2021) https://doi.org/10.1038/s41565-021-00858-8.

de Almeida MS, Susnik E, Drasler B, Taladriz-Blanco P, Petri-Fink A, Rothen-Rutishauser B. Understanding nanoparticle endocytosis to improve targeting strategies in nanomedicine. Chemical Society Reviews, 50(9), 5397–5434 (2021) https://doi.org/10.1039/D0CS01127D.

Saminathan A, Zajac M, Anees P, Krishnan Y. Organelle-level precision with next-generation targeting technologies. Nature Reviews Materials, 7(5), 355–371 (2022) https://doi.org/10.1038/s41578-021-00389-6.

Renard HF, Boucrot E. Unconventional endocytic mechanisms. Current Opinion in Cell Biology, 71, 120–129 (2021) https://doi.org/10.1016/j.ceb.2021.03.010.

Goldmann O, Medina E. Revisiting pathogen exploitation of clathrin-independent endocytosis: mechanisms and implications. Cells, 14(10), 731 (2025) https://doi.org/10.3390/cells14100731.

Wills RC, Hammond GRV. PI(4,5)P2: signaling the plasma membrane. Biochemical Journal, 479(21), 2311–2325 (2022) https://doi.org/10.1042/BCJ20220445.

Vanoye CG, Desai RR, John JD, Hoffman SC, Fink N, Zhang Y, Venkatesh OG, Roe J, Adusumilli S, Jairam NP, Sanders CR. Functional profiling of KCNE1 variants informs population carrier frequency of Jervell and Lange-Nielsen syndrome type 2. Circulation: Genomic and Precision Medicine, 18(6), e005219 (2025) https://doi.org/10.1161/CIRCGEN.125.005219.

Raychaudhuri R, Pandey A, Hegde A, Abdul Fayaz SM, Chellappan DK, Dua K, Mutalik S. Factors affecting the morphology of some organic and inorganic nanostructures for drug delivery: characterization, modifications and toxicological perspectives. Expert Opinion on Drug Delivery, 17(12), 1737–1765 (2020) https://doi.org/10.1080/17425247.2020.1829598.

Johnson A. Mechanistic divergences of endocytic clathrin-coated vesicle formation in mammals, yeasts and plants. Journal of Cell Science, 137(16), jcs261847 (2024) https://doi.org/10.1242/jcs.261847.

Zhang C, Chen L, Hou S. The emerging roles of clathrin-mediated endocytosis in plant development and stress responses. Journal of Plant Physiology, 295, 154189 (2024) https://doi.org/10.1016/j.jplph.2024.154189.

He Z, Zuo P, Xu P, Yuan H, Bhave M, Wei X, Yang Z, Han L, Schmid SL, Chen Z. Dynamic early recruitment of GAK-Hsc70 regulates coated pit maturation. Proceedings of the National Academy of Sciences, 122(22), e2503738122 (2025) https://doi.org/10.1073/pnas.2503738122.

Wang S, Kundu D, Zhang X, Tian X, Peng L, Kim KM. Mdm2-mediated ubiquitination plays a pivotal role in differentiating the endocytic roles of GRK2 and arrestin3. International Journal of Molecular Sciences, 26(7), 3238 (2025) https://doi.org/10.3390/ijms26073238.

Caputo M, Gubar O, Tóth P, Vitale N, Gasman S, Ory S. Lipid asymmetry and membrane trafficking: Transbilayer distribution of structural phospholipids as regulators of exocytosis and endocytosis. Journal of Biological Chemistry, 301(8), 108673 (2025) https://doi.org/10.1016/j.jbc.2025.108673.

Jerjes W, Theodossiou TA, Hirschberg H, Høgset A, Weyergang A, Selbo PK, Hamdoon Z, Hopper C, Berg K. Photochemical internalization for intracellular drug delivery: From basic mechanisms to clinical research. Journal of Clinical Medicine, 9(2), 528 (2020) https://doi.org/10.3390/jcm9020528.

Alhowyan AA, Harisa GI. From molecular therapies to lysosomal transplantation and targeted drug strategies: present applications, limitations and prospects of lysosomal medications. Biomolecules, 15(3), 327 (2025) https://doi.org/10.3390/biom15030327.

Alkafaas SS, Abdallah AM, Ghosh S, Loutfy SA, Elkafas SS, Abdel Fattah NF, Hessien M. Insight into the role of clathrin-mediated endocytosis inhibitors in SARS-CoV-2 infection. Reviews in Medical Virology, 33(1), e2403 (2023) https://doi.org/10.1002/rmv.2403.

Baschieri F, Porshneva K, Montagnac G. Frustrated clathrin-mediated endocytosis causes and possible functions. Journal of Cell Science, 133(11), jcs240861 (2020) https://doi.org/10.1242/jcs.240861.

Filippini A, D’Alessio A. Caveolae and lipid rafts in endothelium: valuable organelles for multiple functions. Biomolecules, 10(9), 1218 (2020) https://doi.org/10.3390/biom10091218.

D’Alessio A. Unraveling the cave: a seventy-year journey into the caveolar network, cellular signaling and human disease. Cells, 12(23), 2680 (2023) https://doi.org/10.3390/cells12232680.

Sohn J, Lin H, Fritch MR, Tuan RS. Influence of cholesterol/caveolin-1/caveolae homeostasis on membrane properties and substrate adhesion characteristics of adult human mesenchymal stem cells. Stem Cell Research & Therapy, 9(1), 86 (2018) https://doi.org/10.1186/s13287-018-0825-2.

Xing Y, Wen Z, Gao W, Lin Z, Zhong J, Jiu Y. Multifaceted functions of host cell caveolae/caveolin-1 in virus infections. Viruses, 12(5), 487 (2020) https://doi.org/10.3390/v12050487.

Parton RG. Caveolae: structure, function and relationship to disease. Annual Review of Cell and Developmental Biology, 34, 111–136 (2018) https://doi.org/10.1146/annurev-cellbio-100617-062737.

Simón L, Campos A, Leyton L, Quest AFG. Caveolin-1 function at the plasma membrane and in intracellular compartments in cancer. Cancer and Metastasis Reviews, 39(2), 435–453 (2020) https://doi.org/10.1007/s10555-020-09871-0.

Mettlen M, Chen PH, Srinivasan S, Danuser G, Schmid SL. Regulation of clathrin-mediated endocytosis. Annual Review of Biochemistry, 87, 871–896 (2018) https://doi.org/10.1146/annurev-biochem-062917-012644.

Fu X, Shi Y, Qi T, Qiu S, Huang Y, Zhao X, Sun Q, Lin G. Precise design strategies of nanomedicine for improving cancer therapeutic efficacy using subcellular targeting. Signal Transduction and Targeted Therapy, 5(1), 262 (2020) https://doi.org/10.1038/s41392-020-00367-1.

Berencsi III G, Ördög K. Polarised transfer of proteins through the syncytiotrophoblast and tissue culture cell lines. In: Maternal Fetal Transmission of Human Viruses and their Influence on Tumorigenesis. Springer Netherlands, 223–247 (2012) https://doi.org/10.1007/978-94-007-3476-2_11.

Fung KY, Fairn GD, Lee WL. Transcellular vesicular transport in epithelial and endothelial cells: challenges and opportunities. Traffic, 19(1), 5–18 (2018) https://doi.org/10.1111/tra.12531.

Zhang Y, Srivastava V, Zhang B. Mammalian cargo receptors for endoplasmic reticulum-to-Golgi transport: mechanisms and interactions. Biochemical Society Transactions, 51(3), 971–981 (2023) https://doi.org/10.1042/BST20220938.

Barman D, Drolia R. Caveolin-mediated endocytosis: bacterial pathogen exploitation and host-pathogen interaction. Cells, 13(1), 2 (2024) https://doi.org/10.3390/cells13010002.

Huo J, Mo L, Lv X, Du Y, Yang H. Ion channel regulation in caveolae and its pathological implications. Cells, 14(9), 631 (2025) https://doi.org/10.3390/cells14090631.

Sabourian P, Yazdani G, Ashraf SS, Frounchi M, Mashayekhan S, Kiani S, Kakkar A. Effect of physico-chemical properties of nanoparticles on their intracellular uptake. International Journal of Molecular Sciences, 21(21), 8019 (2020) https://doi.org/10.3390/ijms21218019.

Ocket E, Matthaeus C. Insights in caveolae protein structure arrangements and their local lipid environment. Biological Chemistry, 405(9–10), 627–640 (2024) https://doi.org/10.1515/hsz-2024-0125.

Varga Z, Fehér B, Kitka D, Wacha A, Bóta A, Berényi S, Pipich V, Fraikin JL. Size measurement of extracellular vesicles and synthetic liposomes: the impact of the hydration shell and the protein corona. Colloids and Surfaces B: Biointerfaces, 192, 111053 (2020) https://doi.org/10.1016/j.colsurfb.2020.111053.

Goldmann O, Medina E. Revisiting pathogen exploitation of clathrin-independent endocytosis: mechanisms and implications. Cells, 14(10), 731 (2025) https://doi.org/10.3390/cells14100731.

Athanasopoulos A andre B, Sophianopoulou V, Gournas C. Fungal plasma membrane domains. FEMS Microbiology Reviews, 43(6), 642–673 (2019) https://doi.org/10.1093/femsre/fuz022.

Castello-Serrano I, Heberle FA, Diaz-Rohrer B, Ippolito R, Shurer CR, Lujan P, Campelo F, Levental KR, Levental I. Partitioning to ordered membrane domains regulates the kinetics of secretory traffic. eLife, 13, RP89306 (2024) https://doi.org/10.7554/eLife.89306.

Kozlov MM, Taraska JW. Generation of nanoscopic membrane curvature for membrane trafficking. Nature Reviews Molecular Cell Biology, 24(1), 63–78 (2023) https://doi.org/10.1038/s41580-022-00533-5.

Levic DS, Bagnat M. Self-organization of apical membrane protein sorting in epithelial cells. The FEBS Journal, 289(3), 659–670 (2022) https://doi.org/10.1111/febs.16220.

Changede R, Cai H, Wind SJ, Sheetz MP. Integrin nanoclusters can bridge thin matrix fibres to form cell-matrix adhesions. Nature Materials, 18(12), 1366–1375 (2019) https://doi.org/10.1038/s41563-019-0460-4.

Delehedde C, Even L, Midoux P, Pichon C, Perche F. Intracellular routing and recognition of lipid-based mRNA nanoparticles. Pharmaceutics, 13(7), 945 (2021) https://doi.org/10.3390/pharmaceutics13070945.

Perrigue PM, Murray RA, Mielcarek A, Henschke A, Moya SE. Degradation of drug delivery nanocarriers and payload release: a review of physical methods for tracing nanocarrier biological fate. Pharmaceutics, 13(6), 770 (2021) https://doi.org/10.3390/pharmaceutics13060770.

Liu YY, Sun ZX, Liu J, Zhang Q, Liu Y, Cao A, Sun YP, Wang H. On the cellular uptake and exocytosis of carbon dots: significant cell type dependence and effects of cell division. ACS Applied Biomaterials, 5(9), 4378–4389 (2022) https://doi.org/10.1021/acsabm.2c00476.

Del Pozo MA, Lolo FN, Echarri A. Caveolae: mechanosensing and mechanotransduction devices linking membrane trafficking to mechanoadaptation. Current Opinion in Cell Biology, 68, 113–123 (2021) https://doi.org/10.1016/j.ceb.2020.10.007.

Limozin L, Puech PH. Membrane organization and physical regulation of lymphocyte antigen receptors: a biophysicist’s perspective. Journal of Membrane Biology, 252(4–5), 397–412 (2019) https://doi.org/10.1007/s00232-019-00081-y.

Leonard TA, Loose M, Martens S. The membrane surface as a platform that organizes cellular and biochemical processes. Developmental Cell, 58(15), 1315–1332 (2023) https://doi.org/10.1016/j.devcel.2023.06.009.

Chen Z, Schmid SL. Evolving models for assembling and shaping clathrin-coated pits. Journal of Cell Biology, 219(9), e202005126 (2020) https://doi.org/10.1083/jcb.202005126.

Zimmer O, Goepferich A. How clathrin-coated pits control nanoparticle avidity for cells. Nanoscale Horizons, 8(2), 256–269 (2023) https://doi.org/10.1039/D2NH00543C.

Shin JH, Song M, Paik SB, Jung MW. Spatial organization of functional clusters representing reward and movement information in the striatal direct and indirect pathways. Proceedings of the National Academy of Sciences, 117(43), 27004–27015 (2020) https://doi.org/10.1073/pnas.2010361117.

Lin A, Che C, Jiang A, Qi C, Glaviano A, Zhao Z, Zhang Z, Liu Z, Zhou Z, Cheng Q, Yuan S. Protein spatial structure meets artificial intelligence: revolutionizing drug synergy-antagonism in precision medicine. Advanced Science, 12(33), e07764 (2025) https://doi.org/10.1002/advs.202507764.

Erlendsson S, Teilum K. Binding revisited: avidity in cellular function and signaling. Frontiers in Molecular Biosciences, 7, 615565 (2021) https://doi.org/10.3389/fmolb.2020.615565.

Hamzeh M, Mirahsani S, Ahmadpoor F, Farokhirad S. From single ligand-receptor bond strength to collective avidity: mechanics-guided superselective nanoparticle adhesion to biological membranes. Langmuir, 41(51), 34210–34226 (2025) https://doi.org/10.1021/acs.langmuir.5c03244.

Wang X, Wang WX. Cellular journey of nanomaterials: theories, trafficking and kinetics. Aggregate, 4(6), e372 (2023) https://doi.org/10.1002/agt2.372.

Lin J, Miao L, Zhong G, Lin CH, Dargazangy R, Alexander-Katz A. Understanding the synergistic effect of physicochemical properties of nanoparticles and their cellular entry pathways. Communications Biology, 3(1), 205 (2020) https://doi.org/10.1038/s42003-020-0935-x.

Haghighi E, Abolmaali SS, Dehshahri A, Mousavi Shaegh SA, Azarpira N, Tamaddon AM. Navigating the intricate in-vivo journey of lipid nanoparticles tailored for the targeted delivery of RNA therapeutics: a quality-by-design approach. Journal of Nanobiotechnology, 22(1), 710 (2024) https://doi.org/10.1186/s12951-024-02928-0.

Singha T, Polley A, Barma M. Clustering of lipids driven by integrin. Soft Matter, 19(35), 6814–6824 (2023) https://doi.org/10.1039/D3SM00642A.

Bahammou D, Recorbet G, Mamode Cassim A, Robert F, Balliau T, Van Delft P, Haddad Y, Mongrand S, Fouillen L, Simon-Plas F. A combined lipidomic and proteomic profiling of Arabidopsis thaliana plasma membrane. The Plant Journal, 119(3), 1570–1595 (2024) https://doi.org/10.1111/tpj.17017.

Ma Z, Liu X, Nath S, Sun H, Tran TM, Yang L, Mayor S, Miao Y. Formin nanoclustering-mediated actin assembly during plant flagellin and DSF signaling. Cell Reports, 34(13), 108884 (2021) https://doi.org/10.1016/j.celrep.2021.108884.

Debnath K, Pal S, Jana NR. Chemically designed nanoscale materials for controlling cellular processes. Accounts of Chemical Research, 54(14), 2916–2927 (2021) https://doi.org/10.1021/acs.accounts.1c00215.

de Almeida MS, Susnik E, Drasler B, Taladriz-Blanco P, Petri-Fink A, Rothen-Rutishauser B. Understanding nanoparticle endocytosis to improve targeting strategies in nanomedicine. Chemical Society Reviews, 50(9), 5397–5434 (2021) https://doi.org/10.1039/D0CS01127D.

Shen Z, Ye H, Yi X, Li Y. Membrane wrapping efficiency of elastic nanoparticles during endocytosis: size and shape matter. ACS Nano, 13(1), 215–228 (2019) https://doi.org/10.1021/acsnano.8b05340.

Villanueva-Flores F, Castro-Lugo A, Ramírez OT, Palomares LA. Understanding cellular interactions with nanomaterials: towards a rational design of medical nanodevices. Nanotechnology, 31(13), 132002 (2020) https://doi.org/10.1088/1361-6528/ab5bc8.

Lu CH, Lee CE, Nakamoto ML, Cui B. Cellular signaling at the nano-bio interface: spotlighting membrane curvature. Annual Review of Physical Chemistry, 76(1), 251–277 (2025) https://doi.org/10.1146/annurev-physchem-082723-024324.

Kariuki R, Mirihana KA, Penman R, Hung A, Meftahi N, Bryant G, Ramsland PA, Voïtchovsky K, Conn CE, Contini C, Bryant SJ. Interactions of nanoparticles with living and synthetic bio-membranes. Chemical Society Reviews, 2025 https://doi.org/10.1039/D4CS00847H.

Choi Y, Cho BK, Seok SH, Kim C, Ryu JH, Kwon IC. Controlled spatial characteristics of ligands on nanoparticles: determinant of cellular functions. Journal of Controlled Release, 360, 672–686 (2023) https://doi.org/10.1016/j.jconrel.2023.07.021.

Lin G, Zhang M. Ligand chemistry in antitumor theranostic nanoparticles. Accounts of Chemical Research, 56(12), 1578–1590 (2023) https://doi.org/10.1021/acs.accounts.3c00118.

Sousa AA, Schuck P, Hassan SA. Biomolecular interactions of ultrasmall metallic nanoparticles and nanoclusters. Nanoscale Advances, 3(11), 2995–3027 (2021) https://doi.org/10.1039/D1NA00025A.

Domínguez CM, Niemeyer CM. Clustering of membrane receptors: insights from DNA origami-based approaches. Small, 21(30), 2503543 (2025) https://doi.org/10.1002/smll.202503543.

Rinaldi DA, Kanagy WK, Grattan RM, David JC, Kaye HC, Burns EA, Palomino M, Lucero SR, Wester MJ, Tapia L, Jacobson B. Antigen properties shape organization of FcεRI aggregates to tune mast cell signaling. bioRxiv, 2025:2023-08 https://doi.org/10.1101/2023.08.31.555687.

Garcia VA, Eberts PM, Ogle BM, Sarkar CA. Valency-affinity mapping of multivalent liposomes for tunable target cell discrimination. Drug Delivery, 32(1), 2512950 (2025) https://doi.org/10.1080/10717544.2025.2512950.

Nagata Y, Suzuki R. FcεRI: a master regulator of mast cell functions. Cells, 11(4), 622 (2022) https://doi.org/10.3390/cells11040622.

Bakshi AK, Haider T, Tiwari R, Soni V. Critical parameters for design and development of multivalent nanoconstructs: recent trends. Drug Delivery and Translational Research, 12(10), 2335–2358 (2022) https://doi.org/10.1007/s13346-021-01114-9.

Shi L, Zhang J, Zhao M, Tang S, Cheng X, Zhang W, Li W, Liu X, Peng H, Wang Q. Effects of polyethylene glycol on the surface of nanoparticles for targeted drug delivery. Nanoscale, 13(24), 10748–10764 (2021) https://doi.org/10.1039/D1NR01565G.

Parray ZA, Hassan MI, Ahmad F, Islam A. Amphiphilic nature of polyethylene glycols and their role in medical research. Polymer Testing, 82, 106316 (2020) https://doi.org/10.1016/j.polymertesting.2019.106316.

Maurel M, Montheil T, Martin J, Chaar L, Guzman-Gonzalez V, Couvet M, Jacquet T, Jia T, Eymin B, Parra K, Dumy P. Design of PEGylated three ligands silica nanoparticles for multi-receptor targeting. Nanomaterials, 11(1), 177 (2021) https://doi.org/10.3390/nano11010177.

Liang D, Dahal U, Wu M, Murphy CJ, Cui Q. Ligand length and surface curvature modulate nanoparticle surface heterogeneity and electrostatics. The Journal of Physical Chemistry C, 124(44), 24513–24525 (2020) https://doi.org/10.1021/acs.jpcc.0c07103.

Kim Y, Ji S, Nam JM. A chemist’s view on electronic and steric effects of surface ligands on plasmonic metal nanostructures. Accounts of Chemical Research, 56(16), 2139–2150 (2023) https://doi.org/10.1021/acs.accounts.3c00256.

Francia V, Montizaan D, Salvati A. Interactions at the cell membrane and pathways of internalization of nano-sized materials for nanomedicine. Beilstein Journal of Nanotechnology, 11(1), 338–353 (2020) https://doi.org/10.3762/bjnano.11.24.

Almeida H, Traverso G, Sarmento B, das Neves J. Nanoscale anisotropy for biomedical applications. Nature Reviews Bioengineering, 2(7), 609–625 (2024) https://doi.org/10.1038/s44222-024-00208-4.

Makhani EY, Zhang A, Haun JB. Quantifying and controlling bond multivalency for advanced nanoparticle targeting to cells. Nano Convergence, 8(1), 38 (2021) https://doi.org/10.1186/s40580-021-00288-6.

Bila H. Multivalent pattern recognition through engineering of spatial tolerance in DNA-based nanomaterials. Doctoral dissertation, EPFL (2021) https://doi.org/10.5075/epfl-thesis-10604.

Erlendsson S, Teilum K. Binding revisited: avidity in cellular function and signaling. Frontiers in Molecular Biosciences, 7, 615565 (2021) https://doi.org/10.3389/fmolb.2020.615565.

Clarke RJ. Electrostatic switch mechanisms of membrane protein trafficking and regulation. Biophysical Reviews, 15(6), 1967–1985 (2023) https://doi.org/10.1007/s12551-023-01144-5.

Bodosa J, Iyer SS, Srivastava A. Preferential protein partitioning in biological membrane with coexisting liquid ordered and liquid disordered phase behavior: underlying design principles. The Journal of Membrane Biology, 253(6), 551–562 (2020) https://doi.org/10.1007/s00232-020-00154-7.

Luís JP, Mata AI, Simões CJ, Brito RM. Conformational dynamics of the soluble and membrane-bound forms of interleukin-1 receptor type-1: insights into linker flexibility and domain orientation. International Journal of Molecular Sciences, 23(5), 2599 (2022) https://doi.org/10.3390/ijms23052599.

Zhang Y, Li L, Wang J. Wrapping of a vesicle nanoparticle with variable bending stiffness by membrane. Journal of the Mechanics and Physics of Solids, 167, 104991 (2022) https://doi.org/10.1016/j.jmps.2022.104991.

Ren J, Andrikopoulos N, Velonia K, Tang H, Cai R, Ding F, Ke PC, Chen C. Chemical and biophysical signatures of the protein corona in nanomedicine. Journal of the American Chemical Society, 144(21), 9184–9205 (2022) https://doi.org/10.1021/jacs.2c01889.

de Almeida MS, Susnik E, Drasler B, Taladriz-Blanco P, Petri-Fink A, Rothen-Rutishauser B. Understanding nanoparticle endocytosis to improve targeting strategies in nanomedicine. Chemical Society Reviews, 50(9), 5397–5434 (2021) https://doi.org/10.1039/D0CS01127D

Cail RC, Shirazinejad CR, Drubin DG. Induced nanoscale membrane curvature bypasses the essential endocytic function of clathrin. Journal of Cell Biology, 221(7), e202109013 (2022) https://doi.org/10.1083/jcb.202109013.

Morais M, Dias F, Figueiredo P, Tavares I, Escudeiro C, Teixeira MR, Teixeira A, Lisboa J, Mikkonen KS, Teixeira AL, Medeiros R. Silver nanoparticles (AgNPs) uptake by caveolae-dependent endocytosis is responsible for their selective effect towards castration resistant prostate cancer. International Journal of Nanomedicine, 19, 9091–9107 (2024) https://doi.org/10.2147/IJN.S481557.

Lammel T, Mackevica A, Johansson BR, Sturve J. Endocytosis, intracellular fate, accumulation and agglomeration of titanium dioxide (TiO₂) nanoparticles in the rainbow trout liver cell line RTL-W1. Environmental Science and Pollution Research, 26(15), 15354–15372 (2019) https://doi.org/10.1007/s11356-019-04951-0.

Peng Y, Gao Z, Qiao B, Li D, Pang H, Lai X, Pu Q, Zhang R, Zhao X, Zhao G, Xu D. Size-controlled DNA tile self-assembly nanostructures through caveolae-mediated endocytosis for signal-amplified imaging of microRNAs in living cells. Advanced Science, 10(21), 2300614 (2023) https://doi.org/10.1002/advs.202300614.

Borisov DV, Veselovsky AV. Ligand-receptor binding kinetics in drug design. Biochemistry (Moscow), Supplement Series B: Biomedical Chemistry, 14(3), 228–240 (2020) https://doi.org/10.1134/S1990750820030032.

Bernetti M, Masetti M, Rocchia W, Cavalli A. Kinetics of drug binding and residence time. Annual Review of Physical Chemistry, 70(1), 143–171 (2019) https://doi.org/10.1146/annurev-physchem-050317-021340.

Yap SL, Dyett B, Hobro AJ, Nguyen H, Smith NI, Drummond CJ, Conn CE, Tran N. The internal nanostructure of lipid nanoparticles influences their diverse cellular uptake pathways. Small, 21(40), 2500903 (2025) https://doi.org/10.1002/smll.202500903.

Elnathan R, Barbato MG, Guo X, Mariano A, Wang Z, Santoro F, Shi P, Voelcker NH, Xie X, Young JL, Zhao Y. Biointerface design for vertical nanoprobes. Nature Reviews Materials, 7(12), 953–973 (2022) https://doi.org/10.1038/s41578-022-00463-7.

Thomas RG, Surendran SP, Jeong YY. Tumor microenvironment-stimuli responsive nanoparticles for anticancer therapy. Frontiers in Molecular Biosciences, 7, 610533 (2020) https://doi.org/10.3389/fmolb.2020.610533.

Sun Y, Davis E. Nanoplatforms for targeted stimuli-responsive drug delivery: a review of platform materials and stimuli-responsive release and targeting mechanisms. Nanomaterials, 11(3), 746 (2021) https://doi.org/10.3390/nano11030746.

Prichard KL, O'Brien NS, Murcia SR, Baker JR, McCluskey A. Role of clathrin and dynamin in clathrin-mediated endocytosis/synaptic vesicle recycling and implications in neurological diseases. Frontiers in Cellular Neuroscience, 15, 754110 (2022) https://doi.org/10.3389/fncel.2021.754110.

Placidi G, Mattu C, Ciardelli G, Campa CC. Small molecules targeting endocytic uptake and recycling pathways. Frontiers in Cell and Developmental Biology, 11, 1125801 (2023) https://doi.org/10.3389/fcell.2023.1125801.

Limozin L, Puech PH. Membrane organization and physical regulation of lymphocyte antigen receptors: a biophysicist’s perspective. Journal of Membrane Biology, 252(4–5), 397–412 (2019) https://doi.org/10.1007/s00232-019-00079-0.

Gold MR, Reth MG. Antigen receptor function in the context of the nanoscale organization of the B cell membrane. Annual Review of Immunology, 37(1), 97–123 (2019) https://doi.org/10.1146/annurev-immunol-042718-041704.

Hajdu T, Váradi T, Rebenku I, Kovács T, Szöllősi J, Nagy P. Comprehensive model for epidermal growth factor receptor ligand binding involving conformational states of the extracellular and the kinase domains. Frontiers in Cell and Developmental Biology, 8, 776 (2020) https://doi.org/10.3389/fcell.2020.00776.

Burgess AW. Regulation of signaling from the epidermal growth factor family. The Journal of Physical Chemistry B, 126(39), 7475–7485 (2022) https://doi.org/10.1021/acs.jpcb.2c04083.

Aman J, Margadant C. Integrin-dependent cell-matrix adhesion in endothelial health and disease. Circulation Research, 132(3), 355–378 (2023) https://doi.org/10.1161/CIRCRESAHA.122.321620.

Slusarczyk P, Mleczko-Sanecka K. The multiple facets of iron recycling. Genes, 12(9), 1364 (2021) https://doi.org/10.3390/genes12091364.

Galy B, Conrad M, Muckenthaler M. Mechanisms controlling cellular and systemic iron homeostasis. Nature Reviews Molecular Cell Biology, 25(2), 133–155 (2024) https://doi.org/10.1038/s41580-023-00648-1.

Kanno S, Hirano S, Sakamoto T, Furuyama A, Takase H, Kato H, Fukuta M, Aoki Y. Scavenger receptor MARCO contributes to cellular internalization of exosomes by dynamin-dependent endocytosis and macropinocytosis. Scientific Reports, 10(1), 21795 (2020) https://doi.org/10.1038/s41598-020-78464-2.

Tran TD, Pham DT. Identification of anticancer drug target genes using an outside competitive dynamics model on cancer signalling networks. Scientific Reports, 11(1), 14095 (2021) https://doi.org/10.1038/s41598-021-93503-4.

Nair A, Chauhan P, Saha B, Kubatzky KF. Conceptual evolution of cell signalling. International Journal of Molecular Sciences, 20(13), 3292 (2019) https://doi.org/10.3390/ijms20133292.

Katoh K. Integrin and its associated proteins as a mediator for mechano-signal transduction. Biomolecules, 15(2), 166 (2025) https://doi.org/10.3390/biom15020166.

Romero S, Le Clainche C, Gautreau AM. Actin polymerization downstream of integrins: signaling pathways and mechanotransduction. Biochemical Journal, 477(1), 1–21 (2020) https://doi.org/10.1042/BCJ20190428.

Greenlee JD, Subramanian T, Liu K, King MR. Rafting down the metastatic cascade: the role of lipid rafts in cancer metastasis, cell death and clinical outcomes. Cancer Research, 81(1), 5–17 (2021) https://doi.org/10.1158/0008-5472.CAN-20-2190.

Bariwal J, Ma H, Altenberg GA, Liang H. Nanodiscs: a versatile nanocarrier platform for cancer diagnosis and treatment. Chemical Society Reviews, 51(5), 1702–1728 (2022) https://doi.org/10.1039/D1CS01074C.

Yuan M, Han Z, Liang Y, Sun Y, He B, Chen W, Li F. mRNA nanodelivery systems: targeting strategies and administration routes. Biomaterials Research, 27(1), 90 (2023) https://doi.org/10.1186/s40824-023-00429-6.

Sandbhor P, Palkar P, Bhat S, John G, Goda JS. Nanomedicine as a multimodal therapeutic paradigm against cancer: on the way forward in advancing precision therapy. Nanoscale, 16(13), 6330–6364 (2024) https://doi.org/10.1039/D3NR05852F.

Tagliatti E, Cortese K. Imaging endocytosis dynamics in health and disease. Membranes, 12(4), 393 (2022) https://doi.org/10.3390/membranes12040393.

Pathak C, Vaidya FU, Waghela BN, Jaiswara PK, Gupta VK, Kumar A, Rajendran BK, Ranjan K. Insights of endocytosis signaling in health and disease. International Journal of Molecular Sciences, 24(3), 2971 (2023) https://doi.org/10.3390/ijms24032971.

Allen R, Yokota T. Endosomal escape and nuclear localization: critical barriers for therapeutic nucleic acids. Molecules, 29(24), 5997 (2024) https://doi.org/10.3390/molecules29245997.

Dowdy SF, Setten RL, Cui XS, Jadhav SG. Delivery of RNA therapeutics: the great endosomal escape! Nucleic Acid Therapeutics, 32(5), 361–368 (2022) https://doi.org/10.1089/nat.2022.0073.

Molnár M, Sőth Á, Simon-Vecsei Z. Pathways of integrins in the endo-lysosomal system. Biologia Futura, 73(2), 171–185 (2022) https://doi.org/10.1007/s42977-022-00129-8.

Banik SM, Pedram K, Wisnovsky S, Ahn G, Riley NM, Bertozzi CR. Lysosome-targeting chimaeras for degradation of extracellular proteins. Nature, 584(7820), 291–297 (2020) https://doi.org/10.1038/s41586-020-2545-9.

Barman D, Drolia R. Caveolin-mediated endocytosis: bacterial pathogen exploitation and host-pathogen interaction. Cells, 14(1), 2 (2024) https://doi.org/10.3390/cells14010002.

Conniot J, Talebian S, Simões S, Ferreira L, Conde J. Revisiting gene delivery to the brain: silencing and editing. Biomaterials Science, 9(4), 1065–1087 (2021) https://doi.org/10.1039/D0BM01773A.

Han X, Mitchell MJ, Nie G. Nanomaterials for therapeutic RNA delivery. Matter, 3(6), 1948–1975 (2020) https://doi.org/10.1016/j.matt.2020.10.014.

Hastings JF, Skhinas JN, Fey D, Croucher DR, Cox TR. The extracellular matrix as a key regulator of intracellular signalling networks. British Journal of Pharmacology, 176(1), 82–92 (2019) https://doi.org/10.1111/bph.14195.

Zhang B, Li S, Ding J, Guo J, Ma Z, Duan H. Rho-GTPases subfamily: Cellular defectors orchestrating viral infection. Cellular & Molecular Biology Letters, 30(1), 55 (2025) https://doi.org/10.1186/s11658-025-00723-7.

Shao J, Zaro J, Shen Y. Advances in exosome-based drug delivery and tumor targeting from tissue distribution to intracellular fate. International Journal of Nanomedicine, 15, 9355–9371 (2020) https://doi.org/10.2147/IJN.S281890.

Xu Z, Xie Y, Chen W, Deng W. Nanocarrier-based systems for targeted delivery: Current challenges and future directions. MedComm, 6(9), e70337 (2025) https://doi.org/10.1002/mco2.70337.

Huang Q, Li N, Zhang H, Che C, Sun F, Xiong Y, Canady TD, Cunningham BT. Critical review: Digital resolution biomolecular sensing for diagnostics and life science research. Lab on a Chip, 20(16), 2816–2840 (2020) https://doi.org/10.1039/D0LC00506A.

Werner C, Sauer M, Geis C. Super-resolving microscopy in neuroscience. Chemical Reviews, 121(19), 11971–12015 (2021) https://doi.org/10.1021/acs.chemrev.0c01174.

Nguyen TD, Chen YI, Chen LH, Yeh HC. Recent advances in single-molecule tracking and imaging techniques. Annual Review of Analytical Chemistry, 16(1), 253–284 (2023) https://doi.org/10.1146/annurev-anchem-091922-073057.

Kaur A, Kaur P, Ahuja S. Förster resonance energy transfer (FRET) and applications thereof. Analytical Methods, 12(46), 5532–5550 (2020) https://doi.org/10.1039/D0AY01511G.

Wheeler S, Butler SJ. Exploiting the unique properties of lanthanide complexes as FRET probes: From quantitation to protein dynamics. Analysis & Sensing, 3(1), e202200036 (2023) https://doi.org/10.1002/anse.202200036.

Rudinskiy M, Morone D, Molinari M. Fluorescent reporters, imaging and artificial intelligence toolkits to monitor and quantify autophagy, heterophagy and lysosomal trafficking fluxes. Traffic, 25(10), e12957 (2024) https://doi.org/10.1111/tra.12957.

Sakkiah S, Kusko R, Tong W, Hong H. Applications of molecular dynamics simulations in computational toxicology. In: Advances in Computational Toxicology: Methodologies and Applications in Regulatory Science. Cham: Springer International Publishing, 181–212 (2019) https://doi.org/10.1007/978-3-319-93078-5_8.

Li W, Xu K. Super-resolution mapping and quantification of molecular diffusion via single-molecule displacement/diffusivity mapping (SMdM). Accounts of Chemical Research, 58(8), 1224–1235 (2025) https://doi.org/10.1021/acs.accounts.5c00102.

Rahmati M, Silva EA, Reseland JE, Heyward CA, Haugen HJ. Biological responses to physicochemical properties of biomaterial surface. Chemical Society Reviews, 49(15), 5178–5224 (2020) https://doi.org/10.1039/C9CS00631J.

Yang Z, Zhang Z, Zhao Y, Ye Q, Li X, Meng L, Long J, Zhang S, Zhang L. Organelle interaction and drug discovery: Towards correlative nanoscopy and molecular dynamics simulation. Frontiers in Pharmacology, 13, 935898 (2022) https://doi.org/10.3389/fphar.2022.935898.

Pinigin KV. Determination of elastic parameters of lipid membranes with molecular dynamics: A review of approaches and theoretical aspects. Membranes, 12(11), 1149 (2022) https://doi.org/10.3390/membranes12111149.

Karal MA, Billah MM, Ahmed M, Ahamed MK. A review on the measurement of the bending rigidity of lipid membranes. Soft Matter, 19(43), 8285–8304 (2023) https://doi.org/10.1039/D3SM00914A.

Erbaş A, de la Cruz MO, Marko JF. Receptor-ligand rebinding kinetics in confinement. Biophysical Journal, 116(9), 1609–1624 (2019) https://doi.org/10.1016/j.bpj.2019.03.015.

Su Z, Dhusia K, Wu Y. Understanding the functional role of membrane confinements in TNF-mediated signaling by multiscale simulations. Communications Biology, 5(1), 228 (2022) https://doi.org/10.1038/s42003-022-03173-5.

Cogno N, Axenie C, Bauer R, Vavourakis V. Agent-based modeling in cancer biomedicine: Applications and tools for calibration and validation. Cancer Biology & Therapy, 25(1), 2344600 (2024) https://doi.org/10.1080/15384047.2024.2344600.

Alafeef M, Srivastava I, Pan D. Machine learning for precision breast cancer diagnosis and prediction of the nanoparticle cellular internalization. ACS Sensors, 5(6), 1689–1698 (2020) https://doi.org/10.1021/acssensors.0c00329.

Tran TM, Ma Z, Triebl A, Nath S, Cheng Y, Gong BQ, Han X, Wang J, Li JF, Wenk MR, Torta F. The bacterial quorum sensing signal DSF hijacks Arabidopsis thaliana sterol biosynthesis to suppress plant innate immunity. Life Science Alliance, 3(10) (2020) https://doi.org/10.26508/lsa.202000720.

Rahmati M, Silva EA, Reseland JE, Heyward CA, Haugen HJ. Biological responses to physicochemical properties of biomaterial surface. Chemical Society Reviews, 49(15), 5178–5224 (2020) https://doi.org/10.1039/D0CS00103A.

Aono CM, Aquino VR, Bakuzis AF, Miotto R. Kinetic Monte Carlo approach as a tool for the study of magnetic hyperthermia efficiency. The Journal of Physical Chemistry C, 129(1), 927–939 (2024) https://doi.org/10.1021/acs.jpcc.4c06163.

Wu B, Wang Q, Shi X, Jiang M. Targeting endocytosis and cell communications in the tumor immune microenvironment. Cell Communication and Signaling, 20(1), 161 (2022) https://doi.org/10.1186/s12964-022-00972-9.

Neophytou CM, Panagi M, Stylianopoulos T, Papageorgis P. The role of tumor microenvironment in cancer metastasis: Molecular mechanisms and therapeutic opportunities. Cancers, 13(9), 2053 (2021) https://doi.org/10.3390/cancers13092053.

Szlasa W, Zendran I, Zalesińska A, Tarek M, Kulbacka J. Lipid composition of the cancer cell membrane. Journal of Bioenergetics and Biomembranes, 52(5), 321–342 (2020) https://doi.org/10.1007/s10863-020-09846-4.

Skotland T, Kavaliauskiene S, Sandvig K. The role of lipid species in membranes and cancer-related changes. Cancer and Metastasis Reviews, 39(2), 343–360 (2020) https://doi.org/10.1007/s10555-020-09875-7.

Du Z, Lovly CM. Mechanisms of receptor tyrosine kinase activation in cancer. Molecular Cancer, 17(1), 58 (2018) https://doi.org/10.1186/s12943-018-0782-4.

Metibemu DS, Akinloye OA, Akamo AJ, Ojo DA, Okeowo OT, Omotuyi IO. Exploring receptor tyrosine kinases-inhibitors in cancer treatments. Egyptian Journal of Medical Human Genetics, 20(1), 35 (2019) https://doi.org/10.1186/s43042-019-0032-1.

Massey A, Stewart J, Smith C, Parvini C, McCormick M, Do K, Cartagena-Rivera AX. Mechanical properties of human tumour tissues and their implications for cancer development. Nature Reviews Physics, 6(4), 269–282 (2024) https://doi.org/10.1038/s42254-024-00727-2.

Chaudhuri PK, Low BC, Lim CT. Mechanobiology of tumor growth. Chemical Reviews, 118(14), 6499–6515 (2018) https://doi.org/10.1021/acs.chemrev.8b00181.

Gonzalez FJ, Xie C, Jiang C. The role of hypoxia-inducible factors in metabolic diseases. Nature Reviews Endocrinology, 15(1), 21–32 (2019) https://doi.org/10.1038/s41574-018-0096-z.

Cassani M, Fernandes S, Pagliari S, Cavalieri F, Caruso F, Forte G. Unraveling the role of the tumor extracellular matrix to inform nanoparticle design for nanomedicine. Advanced Science, 12(2), 2409898 (2025) https://doi.org/10.1002/advs.202409898.

Vasilaki D, Bakopoulou A, Tsouknidas A, Johnstone E, Michalakis K. Biophysical interactions between components of the tumor microenvironment promote metastasis. Biophysical Reviews, 13(3), 339–357 (2021) https://doi.org/10.1007/s12551-021-00802-3.

Panico S, Capolla S, Bozzer S, Toffoli G, Dal Bo M, Macor P. Biological features of nanoparticles: Protein corona formation and interaction with the immune system. Pharmaceutics, 14(12), 2605 (2022) https://doi.org/10.3390/pharmaceutics14122605.

Kopac T. Protein corona, understanding the nanoparticle-protein interactions and future perspectives: A critical review. International Journal of Biological Macromolecules, 169, 290–301 (2021) https://doi.org/10.1016/j.ijbiomac.2020.12.082.

Zeng Q, Mousa M, Nadukkandy AS, Franssens L, Alnaqbi H, Alshamsi FY, Safar HA, Carmeliet P. Understanding tumour endothelial cell heterogeneity and function from single-cell omics. Nature Reviews Cancer, 23(8), 544–664 (2023) https://doi.org/10.1038/s41568-023-00576-5.

Mohammadi H, Sahai E. Mechanisms and impact of altered tumour mechanics. Nature Cell Biology, 20(7), 766–774 (2018) https://doi.org/10.1038/s41556-018-0130-0.

Kopac T. Protein corona, understanding the nanoparticle-protein interactions and future perspectives: A critical review. International Journal of Biological Macromolecules, 169, 290–301 (2021) https://doi.org/10.1016/j.ijbiomac.2020.12.082.

Shourni S, Javadi A, Hosseinpour N, Bahramian A, Raoufi M. Characterization of protein corona formation on nanoparticles via the analysis of dynamic interfacial properties: Bovine serum albumin-silica particle interaction. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 638, 128273 (2022) https://doi.org/10.1016/j.colsurfa.2022.128273.

Wei Y, Quan L, Zhou C, Zhan Q. Factors relating to the biodistribution and clearance of nanoparticles and their effects on in vivo application. Nanomedicine, 13(12), 1495–1512 (2018) https://doi.org/10.2217/nnm-2018-0040.

Haripriyaa M, Suthindhiran K. Pharmacokinetics of nanoparticles: Current knowledge, future directions and its implications in drug delivery. Future Journal of Pharmaceutical Sciences, 9(1), 113 (2023) https://doi.org/10.1186/s43094-023-00569-y.

Zhao Y, Sultan D, Liu Y. Biodistribution, excretion and toxicity of nanoparticles. In: Theranostic Bionanomaterials. Elsevier, 27–53 (2019) https://doi.org/10.1016/B978-0-12-815341-8.00002-0.

Metselaar JM, Lammers T. Challenges in nanomedicine clinical translation. Drug Delivery and Translational Research, 10(3), 721–725 (2020) https://doi.org/10.1007/s13346-020-00740-5.

Berger S, Berger M, Bantz C, Maskos M, Wagner E. Performance of nanoparticles for biomedical applications: The in vitro/in vivo discrepancy. Biophysics Reviews, 3(1) (2022) https://doi.org/10.1063/5.0075683.

Menon G, Anandan T, Kolage SM, Shenoy SC, Lohakare OK, Ahire AS, Ravindran D. Theranostics in the management of colorectal cancer. Discover Nano, 20(1), 214 (2025) https://doi.org/10.1007/s42247-025-00935-0.

Herdiana Y. Bridging the gap: The role of advanced formulation strategies in the clinical translation of nanoparticle-based drug delivery systems. International Journal of Nanomedicine, 13039–13053 (2025) https://doi.org/10.2147/IJN.S531075.

Csóka I, Ismail R, Jójárt-Laczkovich O, Pallagi E. Regulatory considerations, challenges and risk-based approach in nanomedicine development. Current Medicinal Chemistry, 28(36), 7461–7476 (2021) https://doi.org/10.2174/0929867328666210126110217.

Thapa RK, Kim JO. Nanomedicine-based commercial formulations: Current developments and prospects. Journal of Pharmaceutical Investigation, 53(1), 19–33 (2023) https://doi.org/10.1007/s40005-022-00587-0.

Yenare PP, Patare RD, Sonawane BP, Sanap KK. Green chemistry innovation: A systematic review on sustainable catalysis and its strategic future directions. Catalysis Science & Technology (2025) https://doi.org/10.1039/D5CY00432A

Manhas J, Edelstein HI, Leonard JN, Morsut L. The evolution of synthetic receptor systems. Nature Chemical Biology, 18(3), 244–255 (2022) https://doi.org/10.1038/s41589-022-00949-2.

Fu X, Shi Y, Qi T, Qiu S, Huang Y, Zhao X, Sun Q, Lin G. Precise design strategies of nanomedicine for improving cancer therapeutic efficacy using subcellular targeting. Signal Transduction and Targeted Therapy, 5(1), 262 (2020) https://doi.org/10.1038/s41392-020-00353-8.

Cong VT, Houng JL, Kavallaris M, Chen X, Tilley RD, Gooding JJ. How can we use the endocytosis pathways to design nanoparticle drug-delivery vehicles to target cancer cells over healthy cells? Chemical Society Reviews, 51(17), 7531–7559 (2022) https://doi.org/10.1039/D1CS01179K.

Zhang Y, Chen X, Hu B, Zou B, Xu Y. Advancements in nanomedicine delivery systems: Unraveling immune regulation strategies for tumor immunotherapy. Nanomedicine, 19(21-22), 1821–1840 (2024) https://doi.org/10.2217/nnm-2024-0184.

Shi Y, Lammers T. Combining nanomedicine and immunotherapy. Accounts of Chemical Research, 52(6), 1543–1554 (2019) https://doi.org/10.1021/acs.accounts.9b00164.

Thomas RG, Surendran SP, Jeong YY. Tumor microenvironment-stimuli responsive nanoparticles for anticancer therapy. Frontiers in Molecular Biosciences, 7, 610533 (2020) https://doi.org/10.3389/fmolb.2020.610533.

Thomas RG, Surendran SP, Jeong YY. Tumor microenvironment-stimuli responsive nanoparticles for anticancer therapy. Frontiers in Molecular Biosciences, 7, 610533 (2020) https://doi.org/10.3389/fmolb.2020.610533.

Svensson E, von Mentzer U, Stubelius A. Achieving precision healthcare through nanomedicine and enhanced model systems. ACS Materials Au, 4(2), 162–173 (2023) https://doi.org/10.1021/acsmaterialsau.3c00067.

Roubert C, Fontaine E, Upton AM. “Upcycling” known molecules and targets for drug-resistant TB. Frontiers in Cellular and Infection Microbiology, 12, 1029044 (2022) https://doi.org/10.3389/fcimb.2022.1029044.

Gardner TJ, Bourne CM, Dacek MM, Kurtz K, Malviya M, Peraro L, Silberman PC, Vogt KC, Unti MJ, Brentjens R, Scheinberg D. Targeted cellular micropharmacies: Cells engineered for localized drug delivery. Cancers, 12(8), 2175 (2020) https://doi.org/10.3390/cancers12082175.